installing pymol in centos 6
Posted: 2013/04/21 02:51:05
Hi,
I am trying to install pymol in centos 6, using the command yum -y install pymol . I am getting the following error :-
[root@bme peptide EGDT]# yum -y install pymol
Setting up Install Process
Resolving Dependencies
--> Running transaction check
---> Package pymol.x86_64 0:1.5.0.2-7.20120218svn3982.el6 will be installed
--> Processing Dependency: python-pmw for package: pymol-1.5.0.2-7.20120218svn3982.el6.x86_64
--> Processing Dependency: glew for package: pymol-1.5.0.2-7.20120218svn3982.el6.x86_64
--> Processing Dependency: apbs for package: pymol-1.5.0.2-7.20120218svn3982.el6.x86_64
--> Processing Dependency: libGLEW.so.1.5()(64bit) for package: pymol-1.5.0.2-7.20120218svn3982.el6.x86_64
--> Running transaction check
---> Package apbs.x86_64 0:1.2.1-4.el6 will be installed
--> Processing Dependency: python-ZSI for package: apbs-1.2.1-4.el6.x86_64
--> Processing Dependency: libmaloc.so.1()(64bit) for package: apbs-1.2.1-4.el6.x86_64
--> Processing Dependency: libf77blas.so.3()(64bit) for package: apbs-1.2.1-4.el6.x86_64
--> Processing Dependency: libblas.so.3()(64bit) for package: apbs-1.2.1-4.el6.x86_64
--> Processing Dependency: libatlas.so.3()(64bit) for package: apbs-1.2.1-4.el6.x86_64
---> Package glew.x86_64 0:1.5.5-1.el6 will be installed
---> Package python-pmw.noarch 0:1.3.2-9.el6 will be installed
--> Processing Dependency: tkinter for package: python-pmw-1.3.2-9.el6.noarch
--> Running transaction check
---> Package apbs.x86_64 0:1.2.1-4.el6 will be installed
--> Processing Dependency: libf77blas.so.3()(64bit) for package: apbs-1.2.1-4.el6.x86_64
--> Processing Dependency: libblas.so.3()(64bit) for package: apbs-1.2.1-4.el6.x86_64
--> Processing Dependency: libatlas.so.3()(64bit) for package: apbs-1.2.1-4.el6.x86_64
---> Package maloc.x86_64 0:0.2-4.el6 will be installed
---> Package python-ZSI.noarch 0:2.0-6.el6 will be installed
---> Package python-pmw.noarch 0:1.3.2-9.el6 will be installed
--> Processing Dependency: tkinter for package: python-pmw-1.3.2-9.el6.noarch
--> Finished Dependency Resolution
Error: Package: apbs-1.2.1-4.el6.x86_64 (epel)
Requires: libf77blas.so.3()(64bit)
Error: Package: python-pmw-1.3.2-9.el6.noarch (epel)
Requires: tkinter
Error: Package: apbs-1.2.1-4.el6.x86_64 (epel)
Requires: libblas.so.3()(64bit)
Error: Package: apbs-1.2.1-4.el6.x86_64 (epel)
Requires: libatlas.so.3()(64bit)
You could try using --skip-broken to work around the problem
** Found 57 pre-existing rpmdb problem(s), 'yum check' output follows:
foundation-git-1.7.11.4-0.x86_64 has missing requires of perl(SVN::Client)
foundation-git-1.7.11.4-0.x86_64 has missing requires of perl(SVN::Core)
foundation-git-1.7.11.4-0.x86_64 has missing requires of perl(SVN::Delta)
foundation-git-1.7.11.4-0.x86_64 has missing requires of perl(SVN::Ra)
1:guestfish-1.7.17-26.el6.x86_64 has missing requires of libguestfs = ('1', '1.7.17', '26.el6')
opt-perl-AcePerl-1.92-0.el6.x86_64 has missing requires of perl(Ace::Browser::LocalSiteDefs)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(Apache::DBI)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(Bio::ASN1::EntrezGene)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(Bio::Expression::Contact)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(Bio::Expression::DataSet)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(Bio::Expression::Platform)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(Bio::Expression::Sample)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(Bio::Phylo::Factory)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(Bio::Phylo::Forest::Tree)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(Bio::Phylo::IO)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(Bio::Phylo::Matrices)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(Bio::Phylo::Matrices::Datum)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(Bio::Phylo::Matrices::Matrix)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(Convert::Binary::C)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(DBD::Pg)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(PostScript::TextBlock)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(Test::Exception)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(Test::Warn)
opt-perl-BioPerl-DB-1.006900-0.el6.noarch has missing requires of perl(DBD::Oracle)
opt-perl-BioPerl-Run-1.006900-0.el6.noarch has missing requires of perl(Bio::Tools::Run::StandAloneBlastPlus::BlastMethods)
opt-perl-BioPerl-Run-1.006900-0.el6.noarch has missing requires of perl(Bio::Tools::Run::WrapperBase::CommandExts)
opt-perl-Cache-Cache-1.06-0.el6.noarch has missing requires of perl(IPC::ShareLite)
opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(Coro)
opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(Coro::Handle)
opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(Coro::Select)
opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(RPC::PlClient) >= ('0', '0.2000', None)
opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(RPC::PlServer) >= ('0', '0.2001', None)
opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(Win32::ODBC)
opt-perl-Data-Stag-0.11-0.el6.x86_64 has missing requires of perl(Tk)
opt-perl-Data-Stag-0.11-0.el6.x86_64 has missing requires of perl(Tk::Label)
opt-perl-Data-Stag-0.11-0.el6.x86_64 has missing requires of perl(Tk::Tree)
opt-perl-Digest-Perl-MD5-1.8-0.el6.noarch has missing requires of /usr/bin/false
opt-perl-HTTP-Cookies-6.01-0.el6.noarch has missing requires of perl(Win32)
opt-perl-IPC-Run-0.92-0.el6.noarch has missing requires of perl(Win32::Process)
opt-perl-IPC-Run-0.92-0.el6.noarch has missing requires of perl(Win32API::File)
opt-perl-MLDBM-2.04-0.el6.noarch has missing requires of perl(FreezeThaw)
opt-perl-Moose-2.0604-0.el6.x86_64 has missing requires of perl(Moose::Conflicts)
opt-perl-Moose-2.0604-0.el6.x86_64 has missing requires of perl(Moose::Error::Util)
opt-perl-Package-Stash-0.33-0.el6.noarch has missing requires of perl(Package::Stash::Conflicts)
opt-perl-SOAP-Lite-0.715-0.el6.noarch has missing requires of perl(MIME::Lite)
opt-perl-SOAP-Lite-0.715-0.el6.noarch has missing requires of perl(SOAP::Transport::TCP)
opt-perl-Spreadsheet-ParseExcel-0.59-0.el6.noarch has missing requires of perl(Jcode)
opt-perl-Spreadsheet-ParseExcel-0.59-0.el6.noarch has missing requires of perl(Spreadsheet::WriteExcel)
opt-perl-Spreadsheet-ParseExcel-0.59-0.el6.noarch has missing requires of perl(Unicode::Map)
opt-perl-XML-SAX-0.99-0.el6.noarch has missing requires of perl(XML::SAX::PurePerl::DTDDecls)
opt-perl-XML-SAX-0.99-0.el6.noarch has missing requires of perl(XML::SAX::PurePerl::DocType)
opt-perl-XML-SAX-0.99-0.el6.noarch has missing requires of perl(XML::SAX::PurePerl::EncodingDetect)
opt-perl-XML-SAX-0.99-0.el6.noarch has missing requires of perl(XML::SAX::PurePerl::XMLDecl)
opt-perl-YAML-0.84-0.el6.noarch has missing requires of perl(Test::Base) >= ('0', '0.47', None)
opt-perl-YAML-0.84-0.el6.noarch has missing requires of perl(Test::Base::Filter)
opt-perl-libwww-perl-6.04-0.el6.noarch has missing requires of perl(Authen::NTLM)
opt-perl-libwww-perl-6.04-0.el6.noarch has missing requires of perl(HTTP::GHTTP)
Can anybody help me in solving the error ??
I am trying to install pymol in centos 6, using the command yum -y install pymol . I am getting the following error :-
[root@bme peptide EGDT]# yum -y install pymol
Setting up Install Process
Resolving Dependencies
--> Running transaction check
---> Package pymol.x86_64 0:1.5.0.2-7.20120218svn3982.el6 will be installed
--> Processing Dependency: python-pmw for package: pymol-1.5.0.2-7.20120218svn3982.el6.x86_64
--> Processing Dependency: glew for package: pymol-1.5.0.2-7.20120218svn3982.el6.x86_64
--> Processing Dependency: apbs for package: pymol-1.5.0.2-7.20120218svn3982.el6.x86_64
--> Processing Dependency: libGLEW.so.1.5()(64bit) for package: pymol-1.5.0.2-7.20120218svn3982.el6.x86_64
--> Running transaction check
---> Package apbs.x86_64 0:1.2.1-4.el6 will be installed
--> Processing Dependency: python-ZSI for package: apbs-1.2.1-4.el6.x86_64
--> Processing Dependency: libmaloc.so.1()(64bit) for package: apbs-1.2.1-4.el6.x86_64
--> Processing Dependency: libf77blas.so.3()(64bit) for package: apbs-1.2.1-4.el6.x86_64
--> Processing Dependency: libblas.so.3()(64bit) for package: apbs-1.2.1-4.el6.x86_64
--> Processing Dependency: libatlas.so.3()(64bit) for package: apbs-1.2.1-4.el6.x86_64
---> Package glew.x86_64 0:1.5.5-1.el6 will be installed
---> Package python-pmw.noarch 0:1.3.2-9.el6 will be installed
--> Processing Dependency: tkinter for package: python-pmw-1.3.2-9.el6.noarch
--> Running transaction check
---> Package apbs.x86_64 0:1.2.1-4.el6 will be installed
--> Processing Dependency: libf77blas.so.3()(64bit) for package: apbs-1.2.1-4.el6.x86_64
--> Processing Dependency: libblas.so.3()(64bit) for package: apbs-1.2.1-4.el6.x86_64
--> Processing Dependency: libatlas.so.3()(64bit) for package: apbs-1.2.1-4.el6.x86_64
---> Package maloc.x86_64 0:0.2-4.el6 will be installed
---> Package python-ZSI.noarch 0:2.0-6.el6 will be installed
---> Package python-pmw.noarch 0:1.3.2-9.el6 will be installed
--> Processing Dependency: tkinter for package: python-pmw-1.3.2-9.el6.noarch
--> Finished Dependency Resolution
Error: Package: apbs-1.2.1-4.el6.x86_64 (epel)
Requires: libf77blas.so.3()(64bit)
Error: Package: python-pmw-1.3.2-9.el6.noarch (epel)
Requires: tkinter
Error: Package: apbs-1.2.1-4.el6.x86_64 (epel)
Requires: libblas.so.3()(64bit)
Error: Package: apbs-1.2.1-4.el6.x86_64 (epel)
Requires: libatlas.so.3()(64bit)
You could try using --skip-broken to work around the problem
** Found 57 pre-existing rpmdb problem(s), 'yum check' output follows:
foundation-git-1.7.11.4-0.x86_64 has missing requires of perl(SVN::Client)
foundation-git-1.7.11.4-0.x86_64 has missing requires of perl(SVN::Core)
foundation-git-1.7.11.4-0.x86_64 has missing requires of perl(SVN::Delta)
foundation-git-1.7.11.4-0.x86_64 has missing requires of perl(SVN::Ra)
1:guestfish-1.7.17-26.el6.x86_64 has missing requires of libguestfs = ('1', '1.7.17', '26.el6')
opt-perl-AcePerl-1.92-0.el6.x86_64 has missing requires of perl(Ace::Browser::LocalSiteDefs)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(Apache::DBI)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(Bio::ASN1::EntrezGene)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(Bio::Expression::Contact)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(Bio::Expression::DataSet)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(Bio::Expression::Platform)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(Bio::Expression::Sample)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(Bio::Phylo::Factory)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(Bio::Phylo::Forest::Tree)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(Bio::Phylo::IO)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(Bio::Phylo::Matrices)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(Bio::Phylo::Matrices::Datum)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(Bio::Phylo::Matrices::Matrix)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(Convert::Binary::C)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(DBD::Pg)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(PostScript::TextBlock)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(Test::Exception)
opt-perl-BioPerl-1.6.901-0.el6.noarch has missing requires of perl(Test::Warn)
opt-perl-BioPerl-DB-1.006900-0.el6.noarch has missing requires of perl(DBD::Oracle)
opt-perl-BioPerl-Run-1.006900-0.el6.noarch has missing requires of perl(Bio::Tools::Run::StandAloneBlastPlus::BlastMethods)
opt-perl-BioPerl-Run-1.006900-0.el6.noarch has missing requires of perl(Bio::Tools::Run::WrapperBase::CommandExts)
opt-perl-Cache-Cache-1.06-0.el6.noarch has missing requires of perl(IPC::ShareLite)
opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(Coro)
opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(Coro::Handle)
opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(Coro::Select)
opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(RPC::PlClient) >= ('0', '0.2000', None)
opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(RPC::PlServer) >= ('0', '0.2001', None)
opt-perl-DBI-1.622-0.el6.x86_64 has missing requires of perl(Win32::ODBC)
opt-perl-Data-Stag-0.11-0.el6.x86_64 has missing requires of perl(Tk)
opt-perl-Data-Stag-0.11-0.el6.x86_64 has missing requires of perl(Tk::Label)
opt-perl-Data-Stag-0.11-0.el6.x86_64 has missing requires of perl(Tk::Tree)
opt-perl-Digest-Perl-MD5-1.8-0.el6.noarch has missing requires of /usr/bin/false
opt-perl-HTTP-Cookies-6.01-0.el6.noarch has missing requires of perl(Win32)
opt-perl-IPC-Run-0.92-0.el6.noarch has missing requires of perl(Win32::Process)
opt-perl-IPC-Run-0.92-0.el6.noarch has missing requires of perl(Win32API::File)
opt-perl-MLDBM-2.04-0.el6.noarch has missing requires of perl(FreezeThaw)
opt-perl-Moose-2.0604-0.el6.x86_64 has missing requires of perl(Moose::Conflicts)
opt-perl-Moose-2.0604-0.el6.x86_64 has missing requires of perl(Moose::Error::Util)
opt-perl-Package-Stash-0.33-0.el6.noarch has missing requires of perl(Package::Stash::Conflicts)
opt-perl-SOAP-Lite-0.715-0.el6.noarch has missing requires of perl(MIME::Lite)
opt-perl-SOAP-Lite-0.715-0.el6.noarch has missing requires of perl(SOAP::Transport::TCP)
opt-perl-Spreadsheet-ParseExcel-0.59-0.el6.noarch has missing requires of perl(Jcode)
opt-perl-Spreadsheet-ParseExcel-0.59-0.el6.noarch has missing requires of perl(Spreadsheet::WriteExcel)
opt-perl-Spreadsheet-ParseExcel-0.59-0.el6.noarch has missing requires of perl(Unicode::Map)
opt-perl-XML-SAX-0.99-0.el6.noarch has missing requires of perl(XML::SAX::PurePerl::DTDDecls)
opt-perl-XML-SAX-0.99-0.el6.noarch has missing requires of perl(XML::SAX::PurePerl::DocType)
opt-perl-XML-SAX-0.99-0.el6.noarch has missing requires of perl(XML::SAX::PurePerl::EncodingDetect)
opt-perl-XML-SAX-0.99-0.el6.noarch has missing requires of perl(XML::SAX::PurePerl::XMLDecl)
opt-perl-YAML-0.84-0.el6.noarch has missing requires of perl(Test::Base) >= ('0', '0.47', None)
opt-perl-YAML-0.84-0.el6.noarch has missing requires of perl(Test::Base::Filter)
opt-perl-libwww-perl-6.04-0.el6.noarch has missing requires of perl(Authen::NTLM)
opt-perl-libwww-perl-6.04-0.el6.noarch has missing requires of perl(HTTP::GHTTP)
Can anybody help me in solving the error ??