zlip related issues during amber installation in Centos

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seke
Posts: 1
Joined: 2018/11/23 16:29:33

zlip related issues during amber installation in Centos

Post by seke » 2018/11/23 16:36:02

Dear Expert,

During the "make install" of Amber i got the output mention below:
FileIO_Gzip.o: In function `FileIO_Gzip::Seek(long)':
FileIO_Gzip.cpp:(.text+0x1cb): undefined reference to `gzseek64'
FileIO_Gzip.o: In function `FileIO_Gzip::Open(char const*, char const*)':
FileIO_Gzip.cpp:(.text+0x243): undefined reference to `gzopen64'
FileIO_Gzip.o: In function `FileIO_Gzip::Tell()':
FileIO_Gzip.cpp:(.text+0x205): undefined reference to `gztell64'
collect2: error: ld returned 1 exit status
make[4]: *** [cpptraj] Error 1
make[4]: Leaving directory `/home/keretsu/amber/amber18/AmberTools/src/cpptraj/src'
make[3]: *** [install] Error 2
make[3]: Leaving directory `/home/keretsu/amber/amber18/AmberTools/src/cpptraj'
make[2]: *** [build_cpptraj] Error 2
make[2]: Leaving directory `/home/keretsu/amber/amber18/AmberTools/src'
make[1]: *** [serial] Error 2
make[1]: Leaving directory `/home/keretsu/amber/amber18/AmberTools/src'
make: *** [install] Error 2

Currently zlip and zlip-devel version 1.2.3 are installed on my system already. What could be the possible cause of the is error? kindly suggest what to do next.
Your advise will be appreciated.

Best, Seke

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toracat
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Re: zlip related issues during amber installation in Centos

Post by toracat » 2018/11/25 00:19:41

I see a list of packages required for the installation of Amber here. Look in the section for "Fedora core". It says, "The above should also work on CentOS and Red Hat Enterprise Linux systems as well."
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